The following journal articles were published using Core technology. Others relate to the lab and the processes utilized by the core.
Sequencing/Bioinformatics
BOOK CHAPTER!
Dittmer, D. P., Yang, D., Sanders, M., Xiong, J., Texier, J., & Bigi, R. (2015). VIRONOMICS: The study of viral genomics in human cancer and disease. In Next Generation Sequencing in Cancer Research, Volume 2: From Basepairs to Bedsides. (pp. 345-366). Springer International Publishing.
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Perkowski EF, Zulauf KE, Weerakoon D, Hayden JD, Ioerger TR, Oreper D, Gomez SM, Sacchettini JC, Braunstein M.
MBio. 2017 Apr 25;8(2). pii: e00333-17. doi: 10.1128/mBio.00333-17.
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Corcoran K, Sherrod CJ, Perkowski EF, Texier J, Li F, Wang IM, McVoy M, Fu TM, Dittmer DP.
Genome Announc. 2017 Jan 19;5(3). pii: e01433-16. doi: 10.1128/genomeA.01433-16.
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Earl Linwood Blewett, Carly J. Sherrod, Jordan R. Texier, Tom M. Conrad, Dirk P. Dittmer.
Genome Announc. 2015 Aug 6;3(4). pii: e00781-15. doi: 10.1128/genomeA.00781-15.
Yang D, Alam Z, Cui X, Chen M, Sherrod CJ, McVoy MA, Schleiss MR, Dittmer DP.
Genome Announc. 2014 Oct 16;2(5). pii: e00928-14. doi: 10.1128/genomeA.00928-14.- Lee S, Chugh PE, Shen H, Eberle R, Dittmer DP.
Bioinformatics. 2013 May 1;29(9):1105-11.
- Yang D, Tamburro K, Dittmer D, Cui X, McVoy MA, Hernandez-Alvarado N, Schleiss MR.
Genome Announc. 2013 Mar 14;1(2):e0005413.
- Tamburro KM, Yang D, Poisson J, Fedoriw Y, Roy D, Lucas A, Sin SH, Malouf N, Moylan V, Damania B, Moll S, van der Horst C, Dittmer DP.
Virology. 2012 Nov 10;433(1):220-5.
Real-time qPCR arrays and Viral load assays聽
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Westmoreland KD, Montgomery ND, Stanley CC, El-Mallawany NK, Wasswa P, van der Gronde T, Mtete I, Butia M, Itimu S, Chasela M, Mtunda M, Kampani C, Liomba NG, Tomoka T, Dhungel BM, Sanders MK, Krysiak R, Kazembe P, Dittmer DP, Fedoriw Y, Gopal S.
Int J Cancer. 2017 Jun 1;140(11):2509-2516. doi: 10.1002/ijc.30682.
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Westmoreland KD, Stanley CC, Montgomery ND, Kaimila B, Kasonkanji E, El-Mallawany NK, Wasswa P, Mtete I, Butia M, Itimu S, Chasela M, Mtunda M, Chikasema M, Makwakwa V, Kampani C, Dhungel BM, Sanders MK, Krysiak R, Tomoka T, Liomba NG, Dittmer DP, Fedoriw Y, Gopal S.
Pediatr Blood Cancer. 2017 May;64(5). doi: 10.1002/pbc.26302.
Ma Z, Jacobs SR, West JA, Stopford C, Zhang Z, Davis Z, Barber GN, Glaunsinger BA, Dittmer DP, Damania B.
Proc Natl Acad Sci U S A. 2015 Aug 4;112(31):E4306-15. doi: 10.1073/pnas.1503831112. Epub 2015 Jul 21.
Gopal S, Liomba NG, Montgomery ND, Moses A, Kaimila B, Nyasosela R, Chikasema M, Dhungel BM, Kampani C, Sanders MK, Krysiak R, Dittmer DP, Fedoriw Y.
J Int AIDS Soc. 2015 Aug 3;18:20122. doi: 10.7448/IAS.18.1.20122. eCollection 2015.- .
Hosseinipour MC, Sweet KM, Xiong J, Namarika D, Mwafongo A, Nyirenda M, Chiwoko L, Kamwendo D, Hoffman I, Lee J, Phiri S, Vahrson W, Damania B, Dittmer DP.
MBio. 2014 Sep 23;5(5):e01633-14. doi: 10.1128/mBio.01633-14.
Gopal S, Fedoriw Y, Montgomery ND, Kampani C, Krysiak R, Sanders MK, Dittmer DP, Liomba NG.
Lancet. 2014 Sep 20;384(9948):1158. doi: 10.1016/S0140-6736(14)61366-0.
Whitehurst CB, Sanders MK, Law M, Wang FZ, Xiong J, Dittmer DP, Pagano JS.
J Virol. 2013 May;87(9):5311-5.
Dillon PJ, Gregory SM, Tamburro K, Sanders MK, Johnson GL, Raab-Traub N, Dittmer DP, Damania B.
Cell Host Microbe. 2013 Feb 13;13(2):204-14.
Roy D, Sin SH, Lucas A, Venkataramanan R, Wang L, Eason A, Chavakula V, Hilton IB, Tamburro KM, Damania B, Dittmer DP.
Cancer Res. 2013 Apr 1;73(7):2235-46.
Gregory SM, Wang L, West JA, Dittmer DP, Damania B.
J Virol. 2012 Apr;86(7):3916-23.
Krown SE, Roy D, Lee JY, Dezube BJ, Reid EG, Venkataramanan R, Han K, Cesarman E, Dittmer DP.
J Acquir Immune Defic Syndr. 2012 Apr 15;59(5):447-54.
miRNA assays
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Chugh PE, Damania BA, Dittmer DP.
PLoS One. 2014 Aug 15;9(8):e104770. doi: 10.1371/journal.pone.0104770. eCollection 2014.
Marquitz AR, Mathur A, Chugh PE, Dittmer DP, Raab-Traub N.
J Virol. 2014 Jan;88(2):1389-93. doi: 10.1128/JVI.02662-13. Epub 2013 Nov 13.
Chugh PE, Sin SH, Ozgur S, Henry DH, Menezes P, Griffith J, Eron JJ, Damania B, Dittmer DP.
PLoS Pathog. 2013 Jul;9(7):e1003484.
Chugh P, Dittmer DP.
Wiley Interdiscip Rev RNA. 2012 Sep-Oct;3(5):601-16.
Yamada M, Gomez JC, Chugh PE, Lowell CA, Dinauer MC, Dittmer DP, Doerschuk CM.
Am J Respir Crit Care Med. 2011 May 15;183(10):1391-401.
Chugh P, Tamburro K, Dittmer DP.
J Vis Exp. 2010 Dec 3;(46). , doi: 10.3791/2210
O’Hara AJ, Chugh P, Wang L, Netto EM, Luz E, Harrington WJ, Dezube BJ, Damania B, Dittmer DP.
PLoS Pathog. 2009 Apr;5(4):e1000389.
O’Hara AJ, Wang L, Dezube BJ, Harrington WJ Jr, Damania B, Dittmer DP.
Blood. 2009 Jun 4;113(23):5938-41.
Xia T, O’Hara A, Araujo I, Barreto J, Carvalho E, Sapucaia JB, Ramos JC, Luz E, Pedroso C, Manrique M, Toomey NL, Brites C, Dittmer DP, Harrington WJ Jr.
Cancer Res. 2008 Mar 1;68(5):1436-42. d
O’Hara AJ, Vahrson W, Dittmer DP.
Blood. 2008 Feb 15;111(4):2347-53.
(2010 and older):
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Lock EF, Ziemiecke R, Marron J, Dittmer DP. |
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BMC Bioinformatics. 2010 Jul 20;11:386. |
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PMID: 20646303 [PubMed – indexed for MEDLINE] Free PMC Article |
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Papin JF, Vahrson W, Larson L, Dittmer DP. |
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J Virol Methods. 2010 Oct;169(1):103-11. Epub 2010 Jul 14. |
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PMID: 20637239 [PubMed – in process] |
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Lechowicz M, Dittmer DP, Lee JY, Krown SE, Wachsman W, Aboulafia D, Dezube BJ, Ratner L, Said J, Ambinder RF. |
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Clin Infect Dis. 2009 Dec 15;49(12):1946-9. |
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PMID: 19911999 [PubMed – indexed for MEDLINE] |
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Wang FZ, Roy D, Gershburg E, Whitehurst CB, Dittmer DP, Pagano JS. |
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J Virol. 2009 Dec;83(23):12108-17. Epub 2009 Sep 16. |
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PMID: 19759127 [PubMed – indexed for MEDLINE] Free PMC Article |
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Han Z, Verma D, Hilscher C, Dittmer DP, Swaminathan S. |
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J Virol. 2009 Nov;83(22):11635-44. Epub 2009 Sep 2. |
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PMID: 19726500 [PubMed – indexed for MEDLINE] Free PMC Article |
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Wen KW, Dittmer DP, Damania B. |
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J Virol. 2009 Oct;83(19):9786-802. Epub 2009 Jul 8. |
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PMID: 19587030 [PubMed – indexed for MEDLINE] Free PMC Article |
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Dittmer DP, Hilscher CJ, Gulley ML, Yang EV, Chen M, Glaser R. |
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Int J Cancer. 2008 Nov 1;123(9):2105-12. |
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PMID: 18688856 [PubMed – indexed for MEDLINE] Free PMC Article |
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Xia T, O’Hara A, Araujo I, Barreto J, Carvalho E, Sapucaia JB, Ramos JC, Luz E, Pedroso C, Manrique M, Toomey NL, Brites C, Dittmer DP, Harrington WJ Jr. |
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Cancer Res. 2008 Mar 1;68(5):1436-42. |
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PMID: 18316607 [PubMed – indexed for MEDLINE] Free PMC Article |
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Nun TK, Kroll DJ, Oberlies NH, Soejarto DD, Case RJ, Piskaut P, Matainaho T, Hilscher C, Wang L, Dittmer DP, Gao SJ, Damania B. |
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Mol Cancer Ther. 2007 Aug;6(8):2360-70. |
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PMID: 17699731 [PubMed – indexed for MEDLINE] Free Article |
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Mutlu AD, Cavallin LE, Vincent L, Chiozzini C, Eroles P, Duran EM, Asgari Z, Hooper AT, La Perle KM, Hilsher C, Gao SJ, Dittmer DP, Rafii S, Mesri EA. |
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Cancer Cell. 2007 Mar;11(3):245-58. Erratum in: Cancer Cell. 2007 May;11(5):471. |
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PMID: 17349582 [PubMed – indexed for MEDLINE] Free PMC Article |
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Petre CE, Sin SH, Dittmer DP. |
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J Virol. 2007 Feb;81(4):1912-22. Epub 2006 Nov 22. |
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PMID: 17121789 [PubMed – indexed for MEDLINE] Free PMC Article |
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Whitby D, Marshall VA, Bagni RK, Miley WJ, McCloud TG, Hines-Boykin R, Goedert JJ, Conde BA, Nagashima K, Mikovits J, Dittmer DP, Newman DJ. |
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Int J Cancer. 2007 Jan 15;120(2):321-8. |
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PMID: 17066452 [PubMed – indexed for MEDLINE] Free PMC Article |
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Hilscher C, Vahrson W, Dittmer DP. |
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Nucleic Acids Res. 2005 Nov 27;33(21):e182. |
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PMID: 16314296 [PubMed – indexed for MEDLINE] Free PMC Article |
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Chang H, Dittmer DP, Shin YC, Hong Y, Jung JU. |
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J Virol. 2005 Nov;79(22):14371-82. Erratum in: J Virol. 2006 Apr;80(8):4203. Chul, Shin-Young [corrected to Shin, Young C]. |
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PMID: 16254371 [PubMed – indexed for MEDLINE] Free PMC Article |
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Dittmer DP, Gonzalez CM, Vahrson W, DeWire SM, Hines-Boykin R, Damania B. |
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J Virol. 2005 Jul;79(13):8637-50. |
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PMID: 15956606 [PubMed – indexed for MEDLINE] Free PMC Article |
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Papin J, Vahrson W, Hines-Boykin R, Dittmer DP. |
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Methods Mol Biol. 2005;292:449-80. |
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PMID: 15507725 [PubMed – indexed for MEDLINE] |
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Papin JF, Vahrson W, Dittmer DP. |
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J Clin Microbiol. 2004 Apr;42(4):1511-8. |
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PMID: 15070997 [PubMed – indexed for MEDLINE] Free PMC Article |
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Dittmer DP. |
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Cancer Res. 2003 May 1;63(9):2010-5. |
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PMID: 12727810 [PubMed – indexed for MEDLINE] Free Article |
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Fakhari FD, Dittmer DP. |
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J Virol. 2002 Jun;76(12):6213-23. |
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PMID: 12021355 [PubMed – indexed for MEDLINE] Free PMC Article |
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